 Product comparison between SNPAlyze
SNPAlyze has the following limitations for analyses:
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Major functions |
Products comparison |
| Standard |
Pro |
| NGS Data Analysis |
Supported import samples （VCF file） |
1,000 samples |
5,000 samples |
| Principal Component Analysis |
50 samples |
3,000 samples |
| Case-Control Study |
50 samples |
3,000 samples |
| SNP and Haplotype Analysis |
Supported import samples |
1,000 samples |
10,000 samples |
| Hardy Weinberg Equilibrium Test |
2,560 loci |
| Case-Control Study |
| Cochran-Armitage Trend Test |
| Logistic Regression Analysis 1 |
| Linkage Disequilibrium Analysis |
1,000 loci |
| Haplotype Inference 2 |
30 loci |
40 loci |
| Haplotype Block Analysis |
1,000 loci |
| Case-Control Haplotype Analysis |
10 loci |
| Bootstrap 3 |
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| htSNP identification |
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| Microsatellite Data 4 |
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| Open and Save SNPAlyze Data file |
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※Samples and loci are the maximum number to be imported.
1HealthSketch Ver.2.5 (or later) is needed to be installed in order to use this function.
2With this product, EM algorithm is applied for all haplotype candidates. Maximum number of loci which can be analysed at once in Standard is 30 and in Pro is 40.
3Bootstrap can be used for Case Control Study,Hardy Weinberg Equilibrium Test,Haplotype Inference,Linkage Disequilibrium Analysis and Cochran-Armitage Trend Test.
4Haplotype Block Analysis is not compatible with Microsatellite Data.
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If you wish to purchase and upgrade your software version, please contact us: info@dynacom.co.jp.
Related information & Links
Please look at SNPAlyze top or product overview about the outline of the whole product.
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